Massive biometric deployments are pervasive in today’s world. But despite the high accuracy of biometric systems, their computational efficiency degrades drastically with an increase in the database size. Thus, it is essential to index them. Here, in this paper, we propose an iris indexing scheme using real-valued deep iris features binarized to iris bar codes (IBC) compatible with the indexing structure. Firstly, for extracting robust iris features, we have designed a network utilizing the domain knowledge of ordinal filtering and learning their nonlinear combinations. Later these real-valued features are binarized. Finally, for indexing the iris dataset, we have proposed a M_com loss that can transform the binary feature into an improved feature compatible with the Multi-Index Hashing scheme. This M_com loss function ensures the equal distribution of Hamming distance among all the contiguous disjoint sub-strings. To the best of our knowledge, this is the first work in the iris indexing domain that presents an end-to-end iris indexing structure. Experimental results on four datasets are presented to depict the efficacy of the proposed approach.